ChromasPro
ChromasPro is for assembly of sequence reads into contigs, with a graphical contig editor which displays aligned chromatograms. It also peforms general sequence analysis such as restriction enzyme mapping, open-reading-frame searches, and BLAST submission.
winget install --id=Technelysium.Chromas.Pro -eDescription
ChromasPro is suitable for DNA sequence assembly projects up to a few megabases, and basic sequence editing and analysis. It is able to assemble data from Sanger sequencers such as ABI, and 454 and Illumina next-generation sequencers, with up to 1,000,000 sequences if 8 Gb RAM is available. ChromasPro has the following features: - Open sequences in Applied Biosystems .ab1, Staden Chromatogram (SCF and ZTR), 454 SFF, FASTA, FASTQ, EMBL, GenBank, SwissProt, GenPept, GCG RSF and plain text formats. - Save sequences in .ab1, .scf, .fasta and .fastq formats. - Assemble overlapping sequences using a graphical interface, generate a consensus and highlight ambiguities for editing. - Use quality data to automatically remove low quality sequence for improved sequence assembly. - Use a reference sequence as a scaffold for assembly. - Generate restriction site and fragment maps, and list cutters, non-cutters and fragments. - Map open reading frames, aided by a G+C frame plot, and translate ORFs with one click. - Print chromatograms, restriction site and fragment maps, and open reading frame maps. - Perform nucleotide and protein BLAST searches through the NCBI web site. - Perform multiple alignments by interfacing with ClustalW. - Reverse & complement sequences and chromatograms. - Search for sequences by exact matching or optimal alignment. - Display translations when editing nucleotide sequences. - Perform reverse translations and plot nucleotide degeneracy. - Plot hydrophilicity and antigenicity of proteins. - Copy an image of a chromatogram section for pasting into documents or presentations.
ChromasPro is available through winget as package ID Technelysium.Chromas.Pro, with version 2.2.0. Use the install command above to set it up on Windows without downloading a separate installer manually.
Technelysium.Chromas.Pro
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